Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015900756.1_cds_XP_016450791.1_45207
CDS Infomation

[gene=LOC107775556] [db_xref=GeneID:107775556] [protein=homeobox-leucine zipper protein ROC3-like] [protein_id=XP_016450791.1] [location=join(11750..11911,11983..12164,12274..12391,13330..13518,14280..14765,15003..15104,15208..15420,15525..15693,15780..16048,16146..16241,16765..17283)] [gbkey=CDS]
Sequence

ATGTTCGGTGATTGCCAACTATTTTCATCCATGGGGATGGGAGGGAGTGCTGTATCTTCA
GACTCACTCTATTCTTCCCCCATTCAGAACCCTAATTTCAACTTCATGGCCATGGGAGGA
AATAACTTGCCTTTCAACATTTTTCCTCCCAATATTATTCCTAAAGAAGAAAATGGACTA
TTGAAAAGCAAAGAAGAAATGGATAGTGGTTCTGGAAGTGAACATATTGAAGGAATGTCT
GGAAATGAACTAGAAACTGAGCAACAACAACAACAGCAACAACAACTGGGCAAAAAAAAG
CGTTATCATCGGCACACTGCTCGCCAGATCCAAGAAATGGAGGCGTTATTTAAGGAATGC
CCACATCCAGATGACAAGCAAAGGCTCAAACTAAGCCAAGACCTTGGCTTAAAACCACGT
CAAGTCAAATTCTGGTTTCAAAACCGACGAACCCAAATGAAGGCTCAACAAGACCGAGCA
GATAATGTTATACTTAGAGCTGAGAATGACAACTTAAAGAATGAAAATTATCGGCTGCAA
GCAGCTTTACGCAGTATTATGTGCCCCAGTTGTGGAGGTCCTGCCATGCTTGGAGAGATG
GGTTATGATGAACAGCAACTTCGCCTTGAAAATGCTCGTCTCAAAGAAGAGTTTGAGCGT
GTATGCTGTCTTGTTTCACAATATAATGGTCGGGGGCCAATGCAAGGAATAGGACCAACA
ACTCCTCTTCTTCCTCCTCCGTTGGAATTAGACATGTCCATTAATTTTTCAAGGAAATTC
GAGGAGCCAATGGCGAATTGCAGTGCCGATATGGTTCCTGTTCCATTCATGCCTGAAAAC
AATTCCCAATTTTCTGGTGGTGGTCCAATTATCTTGGAAGAAGAAAAATCTATTGCAATG
GAACTGGGTCTTTCGTCAATGGATGAACTAGTAAAGATGTGCCAGGCTGCTGACCCACTC
TGGATTCGTACTACTGATTCTGGAAAAGAAGTTCTCAATGTGGAAGAATACTCAAGAATG
TTTCCTTGGCCTGTTGGGATTAAACAGAATAGCAATGAGCTCAGAATTGAAGCAACTCGC
AGCAGTGCTGTTGTTATTATGAATAGCATCACTCTAGTTGATGCACTCTTAGATGCAAAT
AAATGGATAGAACTTTTCCCATCTATAATTTCTAGAGCCAAAACTATTCAAGTTGTGACC
TCAGGAGTATCTGGACATGCAAGTGGTTCTCTTCAACTAATGTTTATGGAAATGCAAGCT
CTCACACCCTTAGTGCCTACACGAGAATGTTATTTCCTCCGTTATTGCCAGCAGAATGTG
GAAGAAGGGACTTGGGCAATTGTTGATTTTCCTCTTGACAGTCTTCACAACAATTTCCCT
GCTCCTTTTTCTTATTTCAAAAGAAGACTTTCTGGCTGCATCATTCAAGACATGCCCAAT
GGCTACTCTAGGGTTACATGGGTTGAACAGGCTGAGGTTGAGGAGAATCCAGTGAATCAG
ATATTCAATCAGTATGTGAGTAGTGGTATGGCATTCGGAGCACAACGATGGTTAGGAATC
TTGCAGAGACAATGCGAAAGGCTAGCTAGCCTTATGGCACGAAACATATCTGACCTTGGA
GTGATACCATCTCCAGAAGCGCGAAAGAGTTTGATGAATCTGGCTCAGAGGATGATCAAA
ACCTTCTGTATGAATATTAGCACCTCTTGTGGACAATCATGGACAGCTCTTTCTGATTCT
CTTGAGGACACTGTTCGAATTACTACCAGAAAAGTCACAGAACCAGGCCAACCCAATGGA
CTAATCCTTTGCGCAGTTTCAACTACTTGGATTCCATATAATCATTTCCAGGTCTTTGAT
CTCTTGAGGGATGAACGTCGAAGAGCTCAGTTGGATGTTCTTTCAAATGGCAACTCACTG
CATGAGGTGGCTCACATTGCAAATGGCTCTCATCCAGGAAATTGCATTTCTCTTCTTCGC
ATTAATGTGGCTAGCAACTCATCCCAGAGCGTAGAGCTGATGCTGCAGGAGAGCTGCACG
GATGATTCCGGCAGCCTTGTGGTCTACACCACCGTCGATGTGGATGCCATCCAGCTAGCC
ATGAACGGCGAGGACCCATCGTGCATTCCTCTTCTTCCCTTAGGCTTTGTTGTAACACCA
GTGGGACAAATCAATAACTTAGACACCAACATTAGTCCTAGTGAAGCTAATTCAGGCACA
CAATCTGCGGAGAAGAGGAACTTGTCAATCCAAGAATCTGGATCTGGAGGCTGCCTGCTC
ACTGTTGGATTACAAGTCCTCGCCAGCACAATTCCAACTGCAAAGCTCAACCTTTCTAGC
GTCACTGCCATTAACCACCACTTATGCAACACCGTACAACAAATCACTGCTGCACTTTCC
GCTTTCTACCCCGAGCCAGCGATAACAGTACCGTCACCACAACTACAAACACAGCAACAG
CAACTAGAACCAAAGCAAGCAGATGAAATTAGCTCAAATTCCTAA

Peptide Sequence

PEP ID

XP_016450791.1
PEP Infomation

PREDICTED: homeobox-leucine zipper protein ROC3-like [Nicotiana tabacum]
Sequence

MFGDCQLFSSMGMGGSAVSSDSLYSSPIQNPNFNFMAMGGNNLPFNIFPPNIIPKEENGL
LKSKEEMDSGSGSEHIEGMSGNELETEQQQQQQQQLGKKKRYHRHTARQIQEMEALFKEC
PHPDDKQRLKLSQDLGLKPRQVKFWFQNRRTQMKAQQDRADNVILRAENDNLKNENYRLQ
AALRSIMCPSCGGPAMLGEMGYDEQQLRLENARLKEEFERVCCLVSQYNGRGPMQGIGPT
TPLLPPPLELDMSINFSRKFEEPMANCSADMVPVPFMPENNSQFSGGGPIILEEEKSIAM
ELGLSSMDELVKMCQAADPLWIRTTDSGKEVLNVEEYSRMFPWPVGIKQNSNELRIEATR
SSAVVIMNSITLVDALLDANKWIELFPSIISRAKTIQVVTSGVSGHASGSLQLMFMEMQA
LTPLVPTRECYFLRYCQQNVEEGTWAIVDFPLDSLHNNFPAPFSYFKRRLSGCIIQDMPN
GYSRVTWVEQAEVEENPVNQIFNQYVSSGMAFGAQRWLGILQRQCERLASLMARNISDLG
VIPSPEARKSLMNLAQRMIKTFCMNISTSCGQSWTALSDSLEDTVRITTRKVTEPGQPNG
LILCAVSTTWIPYNHFQVFDLLRDERRRAQLDVLSNGNSLHEVAHIANGSHPGNCISLLR
INVASNSSQSVELMLQESCTDDSGSLVVYTTVDVDAIQLAMNGEDPSCIPLLPLGFVVTP
VGQINNLDTNISPSEANSGTQSAEKRNLSIQESGSGGCLLTVGLQVLASTIPTAKLNLSS
VTAINHHLCNTVQQITAALSAFYPEPAITVPSPQLQTQQQQLEPKQADEISSNS

Transcript Sequence

Gene sequence data has not been registered.